Scientists extract DNA of ancient woman from Paleolithic society pendant

The researchers used a novel phosphate-based method to isolate DNA from bones and teeth for this study.
Mrigakshi Dixit
Pierced deer tooth discovered from Denisova Cave in southern Siberia that yielded ancient human DNA.
Pierced deer tooth discovered from Denisova Cave in southern Siberia that yielded ancient human DNA.

Max Planck Institute for Evolutionary Anthropology 

The DNA extraction technique has transformed our understanding of our ancient cultural civilizations.  

Using this technique, scientists could determine the owner and origin of a person who wore a deer-based pendant during the Paleolithic period. 

This is a significant advancement because it has previously been difficult to attribute these ancient artifacts to specific individuals. Such in-depth knowledge can help us better understand early human culture and behavior. 

This new study is conducted by an international, interdisciplinary research team, led by the Max Planck Institute for Evolutionary Anthropology in Leipzig. 

Extracting the DNA

The researchers used a novel phosphate-based method to isolate DNA from bones and teeth for this study. This method is non-destructive and carefully extracts the DNA without causing any damage to it. 

This research was focused on recovered artifacts made from skeletal elements in particular. According to the official statement, items like these are more likely to well-preserve DNA found in skin cells, sweat, and other bodily fluids.

To put this technique to the test, the authors first assessed the effect of chemical exposure on the surface structure of ancient bone and tooth fragments recovered from the French cave Quinçay between the 1970s and 1990s. 

“One could say we have created a washing machine for ancient artifacts within our clean laboratory. By washing the artifacts at temperatures of up to 90°C, we are able to extract DNA from the wash waters, while keeping the artifacts intact,” said Elena Essel, the lead author of the study who developed the method, in an official release.

Following this preliminary test, the team applied the novel technique to freshly excavated items, which are less likely to be contaminated with modern human DNA, as is common during excavation.

Pendant belonging to a woman

Finally, they used this method on three tooth pendants recovered from the Bacho Kiro Cave in Bulgaria. These pendants were chosen specifically because they had lower levels of modern DNA contamination during the testing.

During the Upper Paleolithic period, one pendant was made from the tooth of a wapiti deer species. The authors were also able to isolate significant amounts of ancient human DNA from this pendant. “The amount of human DNA we recovered from the pendant was extraordinary,” said Elena Essel. Further adding: “almost as if we had sampled a human tooth.”

Interestingly, the extracted animal and human mitochondrial genomes revealed that the pendant is 19,000 to 25,000 years old. 

Following this, the team moved on to the quest to find the owner of this pendant. The team also identified its human owner using the recovered nuclear genome. According to the number of X chromosomes, "the pendant was made, used, or worn by a woman." 

And this woman was genetically related to ancient Siberian individuals, also known as Ancient North Eurasians, who lived in the same period. 

“Forensic scientists will not be surprised that human DNA can be isolated from an object that has been handled a lot. But it is amazing that this is still possible after 20,000 years,” said Matthias Meyer, a Max Planck geneticist.